FMM is a method of generating K antigens using virtual bond cartesian coordinate transfer matrices. Here, the user is given the flexibility to choose desired inter-residue glycosidic torsion angles.
- Intra-residue glycosidic torsion angles are fixed.
- Some pairs of torsion angles may lead to steric hindrance.
- Definition of phi, psi flows in the decremental order of main chain residue number (View documentation for more details).
- For naming help, view schematic of EK3D four letter naming scheme and the EK3D naming converter.
- Note that the models generated here have identical torsion angles for the repeating unit and may not represent the global minima of the molecule; these models are well-suited as good starting points for modeling studies